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Creators/Authors contains: "Geng, Hao"

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  1. Microbes inhabit natural environments that are remarkably dynamic. Therefore, microbes harbor regulated genetic mechanisms to sense shifts in conditions and induce the appropriate responses. Recent studies suggest that the initial evolution of microbes occupying new niches favors mutations in regulatory pathways. However, it is not clear how this evolution is affected by how quickly conditions change (i.e. dynamics), or which mechanisms are commonly used to implement new regulation. Here, we perform experimental evolution on continuous cultures of Escherichia coli carrying the tetracycline resistance tet operon to identify specific mutations that adapt drug responses to different dynamic regimens of drug administration. We find that cultures evolved under gradually increasing tetracycline concentrations show no mutations in the tet operon, but instead a predominance of fine-tuning mutations increasing the affinity of an alternative efflux pump AcrB to tetracycline. When cultures are instead periodically exposed to large drug doses, all populations evolved transposon insertions in repressor TetR, resulting in loss of regulation and constitutive expression of efflux pump TetA. We use a mathematical model of the dynamics of antibiotic responses to show that sudden exposure to large drug concentrations overwhelm regulated responses, which cannot induce resistance fast enough, resulting in selection for constitutive expression of resistance. These results help explain the frequent loss of regulation of antibiotic resistance by pathogens evolved in clinical environments. Our experiment supports the notion that initial evolution in new ecological niches proceeds largely through regulatory mutations and suggests that transposon insertions are the main mechanism driving this process. 
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    Free, publicly-accessible full text available May 11, 2026
  2. We propose swampland criteria for braneworlds viewed as effective field theories of defects coupled to semiclassical gravity. We do this by exploiting their holographic interpretation. We focus on general features of entanglement entropies and their holographic calculations. Entropies have to be positive. Furthermore, causality imposes certain constraints on the surfaces that are used holographically to compute them, most notably a property known as causal wedge inclusion. As a test case, we explicitly constrain the Dvali-Gabadadze-Porrati term as a second-order-in-derivatives correction to the Randall-Sundrum action. We conclude by discussing the implications of these criteria for the question on whether entanglement islands in theories with massless gravitons are possible in Karch-Randall braneworlds. 
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  3. A<sc>bstract</sc> We study the entanglement phase structure of a holographic boundary conformal field theory (BCFT) in a two-dimensional black hole background. The bulk dual is the AdS3black string geometry with a Karch-Randall brane. We compute the subregion entanglement entropy of various two-sided bipartitions to elucidate the phase space where a Page curve exists in this setup. We do fully analytical computations on both the gravity side and the field theory side and demonstrate that the results precisely match. We discuss the entanglement phase structure describing where a Page curve exists in this geometry in the context of these analytical results. This is a useful model to study entanglement entropy for quantum field theory on a curved background. 
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  4. We propose swampland criteria for braneworlds viewed as effective field theories of defects coupled to semiclassical gravity. We do this by exploiting their holographic interpretation. We focus on general features of entanglement entropies and their holographic calculations. Entropies have to be positive. Furthermore, causality imposes certain constraints on the surfaces that are used holographically to compute them, most notably a property known as causal wedge inclusion. As a test case, we explicitly constrain the Dvali-Gabadadze-Porrati term as a second-order-in-derivatives correction to the Randall-Sundrum action. We conclude by discussing the implications of these criteria for the question on whether entanglement islands in theories with massless gravitons are possible in Karch-Randall braneworlds. 
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  5. A<sc>bstract</sc> We compute holographic entanglement entropy for subregions of a BCFT thermal state living on a nongravitating black hole background. The system we consider is doubly holographic and dual to an eternal black string with an embedded Karch-Randall brane that is parameterized by its angle. Entanglement islands are conventionally expected to emerge at late times to preserve unitarity at finite temperature, but recent calculations at zero temperature have shown such islands do not exist when the brane lies below a critical angle. When working at finite temperature in the context of a black string, we find that islands exist even when the brane lies below the critical angle. We note that although these islands exist when they are needed to preserve unitarity, they are restricted to a finite connected region on the brane which we call the atoll. Depending on two parameters — the size of the subregion and the brane angle — the entanglement entropy either remains constant in time or follows a Page curve. We discuss this rich phase structure in the context of bulk reconstruction. 
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  6. A<sc>bstract</sc> In ordinary gravitational theories, any local bulk operator in an entanglement wedge is accompanied by a long-range gravitational dressing that extends to the asymptotic part of the wedge. Islands are the only known examples of entanglement wedges that are disconnected from the asymptotic region of spacetime. In this paper, we show that the lack of an asymptotic region in islands creates a potential puzzle that involves the gravitational Gauss law, independently of whether or not there is a non-gravitational bath. In a theory with long-range gravity, the energy of an excitation localized to the island can be detected from outside the island, in contradiction with the principle that operators in an entanglement wedge should commute with operators from its complement. In several known examples, we show that this tension is resolved because islands appear in conjunction with a massive graviton. We also derive some additional consistency conditions that must be obeyed by islands in decoupled systems. Our arguments suggest that islands might not constitute consistent entanglement wedges in standard theories of massless gravity where the Gauss law applies. 
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  8. Late-time dominance of entanglement islands plays a critical role in addressing the information paradox for black holes in AdS coupled to an asymptotic non-gravitational bath. A natural question is how this observation can be extended to gravitational systems. To gain insight into this question, we explore how this story is modified within the context of Karch-Randall braneworlds when we allow the asymptotic bath to couple to dynamical gravity. We find that because of the inability to separate degrees of freedom by spatial location when defining the radiation region, the entanglement entropy of radiation emitted into the bath is a time-independent constant, consistent with recent work on black hole information in asymptotically flat space. If we instead consider an entanglement entropy between two sectors of a specific division of the Hilbert space, we then find non-trivial time-dependence, with the Page time a monotonically decreasing function of the brane angle---provided both branes are below a particular angle. However, the properties of the entropy depend discontinuously on this angle, which is the first example of such discontinuous behavior for an AdS brane in AdS space. 
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  9. null (Ed.)